STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA57565.1TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (347 aa)    
Predicted Functional Partners:
AGA57566.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
   0.928
AGA57567.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
   0.921
AGA57564.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
   0.883
AGA58392.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
 
 0.870
AGA58939.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
   0.793
AGA58372.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
   0.783
AGA56947.1
PFAM: Copper amine oxidase N-terminal domain.
  
 
 0.768
AGA59131.1
Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.754
AGA58371.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
   0.745
AGA58391.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
   0.719
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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