STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA58064.1PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M. (209 aa)    
Predicted Functional Partners:
AGA58107.1
PFAM: Stage III sporulation protein AB (spore_III_AB); TIGRFAM: stage III sporulation protein AB.
  
  
 0.858
AGA58106.1
PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AC.
  
  
 0.826
AGA58104.1
PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
  
 0.822
AGA58422.1
PFAM: Sporulation factor SpoIIGA; TIGRFAM: sigma-E processing peptidase SpoIIGA.
  
  
 0.809
AGA58482.1
PFAM: YabP family; TIGRFAM: sporulation protein YqfC.
  
   
 0.806
AGA58105.1
PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AD.
  
  
 0.782
AGA59707.1
PFAM: Stage II sporulation protein E (SpoIIE); TIGRFAM: stage II sporulation protein E.
  
   
 0.782
AGA58085.1
Stage IV sporulation protein B; PFAM: SpoIVB peptidase S55; PDZ domain (Also known as DHR or GLGF); TIGRFAM: stage IV sporulation protein B.
 
   
 0.774
AGA58065.1
TIGRFAM: TIGR00375 family protein.
 
     0.769
AGA56784.1
PFAM: Nucleoside recognition; TIGRFAM: sporulation integral membrane protein YlbJ.
  
   
 0.756
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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