STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA58479.1Putative domain HDIG-containing protein; PFAM: 7TM-HD extracellular; HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG. (747 aa)    
Predicted Functional Partners:
ybeY
Metalloprotein, YbeY/UPF0054 family; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.898
AGA58477.1
PFAM: Prokaryotic diacylglycerol kinase.
 
    0.892
AGA58480.1
Phosphate starvation-inducible protein PhoH, predicted ATPase; PFAM: PhoH-like protein.
     
 0.729
AGA58481.1
PFAM: Putative stage IV sporulation protein YqfD; TIGRFAM: sporulation protein YqfD.
       0.722
AGA58482.1
PFAM: YabP family; TIGRFAM: sporulation protein YqfC.
       0.722
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.721
AGA58476.1
Cytidine deaminase, homotetrameric; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
       0.721
AGA58484.1
Hypothetical protein; PFAM: SigmaW regulon antibacterial.
       0.590
AGA58485.1
Membrane-bound serine protease (ClpP class); PFAM: Serine dehydrogenase proteinase; NfeD-like.
       0.570
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.467
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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