STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA58701.1PFAM: Sporulation and spore germination. (359 aa)    
Predicted Functional Partners:
AGA58103.1
PFAM: Stage III sporulation protein AF (Spore_III_AF); TIGRFAM: stage III sporulation protein AF.
  
    0.784
AGA58101.1
Hypothetical protein.
  
    0.778
AGA58664.1
PFAM: LysM domain; TIGRFAM: stage VI sporulation protein D.
  
    0.775
AGA59000.1
Outer membrane lipoprotein-sorting protein.
  
     0.770
AGA57628.1
PFAM: Bacterial protein YqhG of unknown function.
  
     0.768
AGA57895.1
PFAM: Outer spore coat protein E (CotE).
  
     0.759
AGA59736.1
PFAM: Protein of unknown function (DUF2757).
  
     0.752
AGA58443.1
TIGRFAM: transcription factor, RsfA family.
  
    0.749
AGA57039.1
PFAM: Spore coat protein (Spore_GerQ); TIGRFAM: spore coat protein GerQ.
  
     0.743
AGA59707.1
PFAM: Stage II sporulation protein E (SpoIIE); TIGRFAM: stage II sporulation protein E.
  
     0.741
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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