STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA59379.1ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein. (440 aa)    
Predicted Functional Partners:
AGA59380.1
Permease component of ABC-type sugar transporter; PFAM: Binding-protein-dependent transport system inner membrane component.
   0.913
AGA59378.1
Glycogen debranching enzyme; PFAM: Amylo-alpha-1,6-glucosidase.
 
     0.906
AGA59381.1
ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.892
AGA57230.1
ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
     0.625
AGA59377.1
PFAM: Bacterial regulatory proteins, lacI family; family.
 
     0.592
AGA57229.1
ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
     0.589
AGA56827.1
Hypothetical protein.
  
     0.588
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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