STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA59425.1Arabinogalactan endo-1,4-beta-galactosidase; PFAM: Glycosyl hydrolase family 53. (346 aa)    
Predicted Functional Partners:
AGA59424.1
PFAM: Beta-galactosidase trimerisation domain; Beta-galactosidase C-terminal domain; Beta-galactosidase.
 
  
 0.898
AGA59426.1
ABC-type sugar transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.773
AGA59427.1
ABC-type polysaccharide transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.757
AGA58497.1
Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
     0.751
AGA56983.1
PFAM: Glycosyl hydrolases family 11; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.739
AGA56981.1
PFAM: Glycosyl hydrolases family 11; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.731
AGA57687.1
Beta-mannanase; PFAM: Glycosyl hydrolase family 26; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.694
AGA58379.1
Beta-mannanase; PFAM: Glycosyl hydrolase family 26; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.669
AGA56270.1
Beta-1,4-xylanase; PFAM: Glycosyl hydrolase family 10; Domain of unknown function (DUF1083); Carbohydrate binding domain; S-layer homology domain.
 
     0.663
AGA58380.1
Beta-mannanase; PFAM: Glycosyl hydrolase family 26; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.663
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.