STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA59600.1Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase. (332 aa)    
Predicted Functional Partners:
AGA56981.1
PFAM: Glycosyl hydrolases family 11; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
      0.899
AGA56983.1
PFAM: Glycosyl hydrolases family 11; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
      0.887
AGA59598.1
Hypothetical protein.
       0.773
AGA59599.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.773
AGA58979.1
Putative glycosyl hydrolase; PFAM: Copper amine oxidase N-terminal domain; Glycosyl hydrolases family 18; Bacterial SH3 domain.
 
      0.725
AGA59601.1
Transposase family protein; PFAM: Transposase DDE domain.
       0.482
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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