STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA59925.1Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase. (816 aa)    
Predicted Functional Partners:
AGA59911.1
PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.904
AGA59926.1
Putative S-layer protein; PFAM: S-layer homology domain.
 
     0.826
AGA59215.1
PFAM: Copper amine oxidase N-terminal domain; GDSL-like Lipase/Acylhydrolase.
 
     0.761
AGA58363.1
Putative S-layer protein; PFAM: S-layer homology domain.
  
     0.759
AGA59830.1
PFAM: Copper amine oxidase N-terminal domain.
 
     0.759
AGA59831.1
Putative S-layer protein; PFAM: S-layer homology domain; TIGRFAM: cyanobacterial long protein repeat.
 
     0.758
AGA58828.1
Replication initiation/membrane attachment protein.
  
     0.752
AGA57296.1
Superfamily II DNA helicase; PFAM: HRDC domain.
  
     0.751
AGA57061.1
PFAM: Copper amine oxidase N-terminal domain.
 
     0.750
AGA57920.1
Putative S-layer protein; PFAM: S-layer homology domain.
  
     0.750
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.