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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLS_02090TRAP transporter, DctM subunit. (422 aa)    
Predicted Functional Partners:
CLS_02080
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.970
CLS_02070
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family.
 
 0.959
CLS_16050
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
 0.804
CLS_02050
Predicted amidohydrolase.
  
    0.775
CLS_02060
Protein of unknown function (DUF2848).
       0.775
CLS_16060
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
 0.757
CLS_16730
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.583
CLS_02100
Hypothetical protein.
       0.453
CLS_02030
Transcriptional regulators.
  
    0.400
Your Current Organism:
Clostridium saccharolyticum K10
NCBI taxonomy Id: 717608
Other names: Clostridium cf. saccharolyticum K10, [. cf. saccharolyticum K10, [Clostridium] cf. saccharolyticum K10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.