STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLS_07870Putative cell wall binding repeat. (480 aa)    
Predicted Functional Partners:
CLS_36470
Predicted glycosyltransferases.
 
  
 0.832
CLS_01600
Bacterial SH3 domain.
 
    0.830
CLS_22960
Putative cell wall binding repeat.
 
   
 0.811
CLS_16150
Putative cell wall binding repeat.
 
     0.774
CLS_35200
Putative cell wall binding repeat.
 
     0.774
CLS_28270
Putative cell wall binding repeat.
 
     0.771
CLS_15990
Putative cell wall binding repeat.
 
     0.770
CLS_34690
Listeria-Bacteroides repeat domain (List_Bact_rpt)./Putative cell wall binding repeat.
 
     0.766
CLS_26280
Hypothetical protein.
 
  
 0.761
CLS_31720
Putative cell wall binding repeat.
 
     0.759
Your Current Organism:
Clostridium saccharolyticum K10
NCBI taxonomy Id: 717608
Other names: Clostridium cf. saccharolyticum K10, [. cf. saccharolyticum K10, [Clostridium] cf. saccharolyticum K10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.