STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
AEG32420.1KEGG: tcx:Tcr_1337 choline/carnitine/betaine transport; TIGRFAM: BCCT transporter; PFAM: BCCT transporter; Belongs to the BCCT transporter (TC 2.A.15) family. (653 aa)    
Predicted Functional Partners:
AEG32417.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: tcx:Tcr_0054 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.732
AEG32418.1
PFAM: VacJ-like lipoprotein; KEGG: tcx:Tcr_0055 VacJ-like lipoprotein.
       0.732
mnmE
tRNA modification GTPase mnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.732
tsaC
SUA5/yciO/yrdC domain protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate.
  
    0.649
AEG32416.1
PFAM: Nitroreductase-like; KEGG: tcx:Tcr_0053 nitroreductase.
       0.425
Your Current Organism:
Thiomicrospira cyclica
NCBI taxonomy Id: 717773
Other names: T. cyclica ALM1, Thioalkalimicrobium cyclicum ALM1, Thiomicrospira cyclica ALM1
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