STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ89501.1PFAM: Protein of unknown function DUF1007; KEGG: mmw:Mmwyl1_0285 ABC-type uncharacterized transporter periplasmic component-like protein. (189 aa)    
Predicted Functional Partners:
thrB
Homoserine kinase; PFAM: Aminoglycoside phosphotransferase; manually curated; KEGG: mmw:Mmwyl1_0284 homoserine kinase; TIGRFAM: Homoserine kinase ThrB; Belongs to the pseudomonas-type ThrB family.
       0.773
ADZ89498.1
PFAM: Nickel/cobalt transporter, high-affinity; KEGG: mmw:Mmwyl1_0291 high-affinity nickel-transporter; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
   
 0.770
ADZ89503.1
TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: mmw:Mmwyl1_0283 diguanylate cyclase; SMART: Diguanylate cyclase, predicted.
       0.509
ADZ89504.1
TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: mmw:Mmwyl1_0283 diguanylate cyclase; SMART: Diguanylate cyclase, predicted.
 
     0.497
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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