STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ89522.1Beta-galactosidase; TIGRFAM: Glycoside hydrolase, family 1, beta-glucosidase; KEGG: mmw:Mmwyl1_4295 beta-glucosidase; PFAM: Glycoside hydrolase, family 1. (446 aa)    
Predicted Functional Partners:
ADZ91520.1
KEGG: mmw:Mmwyl1_2088 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain.
 
 
 0.926
ADZ93244.1
KEGG: mmw:Mmwyl1_4341 alpha amylase catalytic region; PFAM: Glycosyl hydrolase, family 13, catalytic domain; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain.
 
 
 0.926
glk
TIGRFAM: Glucokinase; KEGG: mmw:Mmwyl1_1037 glucokinase; PFAM: Glucokinase; Belongs to the bacterial glucokinase family.
      0.768
ADZ91873.1
Pectate lyase; PFAM: Ricin B lectin; Fibronectin, type III; KEGG: sde:Sde_2946 hypothetical protein; SMART: Ricin B lectin.
 
 
   0.766
kdkA
3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.665
ADZ90477.1
PFAM: Ribose/galactose isomerase; KEGG: mmw:Mmwyl1_0781 hypothetical protein.
  
  
 0.507
ADZ90862.1
Sugar-phosphate isomerase, RpiB/LacA/LacB family; KEGG: mmw:Mmwyl1_3112 ribose-5-phosphate isomerase B; TIGRFAM: Ribose/galactose isomerase; PFAM: Ribose/galactose isomerase.
  
  
 0.507
ADZ93159.1
ROK family protein; PFAM: ROK; Transcription regulator TrmB, N-terminal; KEGG: ara:Arad_12395 transcription regulator protein.
  
  
 0.466
ADZ89523.1
KEGG: mmw:Mmwyl1_4294 hypothetical protein.
  
    0.456
ADZ89521.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: kko:Kkor_0142 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.448
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.