STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ89748.1Cryptochrome, DASH family; KEGG: mmw:Mmwyl1_0336 cryptochrome DASH; TIGRFAM: Cryptochrome, DASH; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal. (458 aa)    
Predicted Functional Partners:
ADZ90328.1
PFAM: Domain of unknown function DUF523; Domain of unknown function DUF1722; KEGG: mmw:Mmwyl1_1153 hypothetical protein.
  
  
 0.892
ADZ90231.1
Amino acid adenylation domain protein; SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Amino acid adenylation; KEGG: pfs:PFLU3223 putative non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding.
  
 
 0.677
ADZ92001.1
TIGRFAM: Conserved hypothetical protein CHP03643; KEGG: vha:VIBHAR_06893 hypothetical protein.
 
     0.662
ADZ91243.1
PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: mmw:Mmwyl1_2154 protein tyrosine phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight.
 
  
   0.658
ADZ90196.1
PFAM: Putative thiol-disulphide oxidoreductase DCC; KEGG: pat:Patl_4062 putative thiol-disulphide oxidoreductase DCC.
 
     0.602
ADZ90330.1
KEGG: mmw:Mmwyl1_1155 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR.
 
  
 0.573
ADZ90195.1
KEGG: mmw:Mmwyl1_0930 oxidoreductase, short-chain dehydrogenase/reductase family protein.
  
   
 0.570
ADZ89749.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mmw:Mmwyl1_4089 MotA/TolQ/ExbB proton channel.
       0.516
ADZ89750.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mmw:Mmwyl1_4088 biopolymer transport protein ExbD/TolR.
       0.516
ADZ89751.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mmw:Mmwyl1_4087 biopolymer transport protein ExbD/TolR.
       0.516
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.