STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ89898.1PFAM: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; KEGG: mmw:Mmwyl1_0762 anti-RNA polymerase sigma 70 factor; Belongs to the Rsd/AlgQ family. (156 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.893
ADZ89897.1
WD40 repeat-containing protein; PFAM: WD40 repeat, subgroup; KEGG: mmw:Mmwyl1_0763 WD-40 repeat-containing protein.
 
     0.846
rpoS
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
  
 
 0.822
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
   
 
 0.748
ADZ89849.1
PFAM: Protein of unknown function DUF1282; KEGG: mmw:Mmwyl1_3980 hypothetical protein.
  
     0.683
ADZ89896.1
PFAM: Protein of unknown function DUF423; KEGG: mmw:Mmwyl1_0764 hypothetical protein.
       0.682
ADZ92553.1
PFAM: Protein of unknown function DUF1249; KEGG: mmw:Mmwyl1_3556 hypothetical protein.
  
     0.656
ADZ91029.1
KEGG: mmw:Mmwyl1_2420 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein.
    
 
 0.637
dsbB
Disulfide bond formation protein B; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.
       0.595
ADZ89481.1
KEGG: mmw:Mmwyl1_0321 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02443; PFAM: Conserved hypothetical protein CHP02443.
  
     0.589
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.