STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ89961.1KEGG: mmw:Mmwyl1_2693 CRISPR-associated RAMP Cmr1 family protein; TIGRFAM: CRISPR-associated protein TM1795 family, N-terminal; PFAM: Protein of unknown function DUF324. (423 aa)    
Predicted Functional Partners:
ADZ89956.1
KEGG: mmw:Mmwyl1_2688 CRISPR-associated RAMP Cmr6 family protein; TIGRFAM: CRISPR-associated protein, TM1791; PFAM: Protein of unknown function DUF324.
 
 
 
 0.975
ADZ89958.1
KEGG: alv:Alvin_3131 CRISPR-associated RAMP protein, Cmr4 family; TIGRFAM: CRISPR-associated RAMP Cmr4; PFAM: Protein of unknown function DUF324.
 
 
 
 0.975
ADZ89960.1
TIGRFAM: CRISPR-associated protein Crm2; KEGG: alv:Alvin_3129 CRISPR-associated protein, Crm2 family.
 
 
 
 0.973
ADZ89959.1
PFAM: CRISPR-associated protein, Cmr3; KEGG: mmw:Mmwyl1_2691 hypothetical protein.
 
 
   0.970
ADZ89957.1
KEGG: alv:Alvin_3132 CRISPR-associated protein, Cmr5 family; TIGRFAM: CRISPR-associated protein, Cmr5; PFAM: CRISPR-associated protein, Cmr5.
   
 
 0.887
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.613
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.589
ADZ89955.1
KEGG: cpb:Cphamn1_1249 hypothetical protein.
       0.528
ADZ89954.1
KEGG: pct:PC1_3262 hypothetical protein.
     
 0.483
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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