STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ90128.1KEGG: swd:Swoo_1190 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain. (270 aa)    
Predicted Functional Partners:
ADZ90127.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swd:Swoo_1191 hypothetical protein.
 
     0.784
ADZ92782.1
Helix-turn-helix domain-containing protein AraC type; KEGG: dfe:Dfer_1962 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.
 
   0.782
ADZ91431.1
PFAM: YCII-related; KEGG: rba:RB8484 hypothetical protein.
  
     0.578
ADZ91604.1
KEGG: mmw:Mmwyl1_2775 helix-turn-helix type 11 domain-containing protein.
  
    0.569
ADZ92980.1
KEGG: mmw:Mmwyl1_0369 helix-turn-helix type 11 domain-containing protein.
  
    0.565
ADZ93284.1
KEGG: vap:Vapar_3628 putative transcriptional regulator, Crp/Fnr family.
  
    0.541
ADZ91432.1
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rba:RB8485 ECF subfamily RNA polymerase sigma-70 factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2.
  
     0.539
ADZ93113.1
KEGG: vap:Vapar_3628 putative transcriptional regulator, Crp/Fnr family.
  
    0.482
ADZ90129.1
PFAM: Methyltransferase type 11; KEGG: vsp:VS_1606 SAM-dependent methyltransferase.
       0.463
ADZ90229.1
PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; KEGG: ava:Ava_4108 beta-ketoacyl synthase; SMART: Polyketide synthase, phosphopantetheine-binding.
     
 0.456
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.