STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ90166.1TIGRFAM: Lysine-2,3-aminomutase-like; Conserved hyprothetical protein CHP00238, KamA; KEGG: mmw:Mmwyl1_0898 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM. (336 aa)    
Predicted Functional Partners:
ADZ90168.1
Uncharacterized protein YjeA; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); TIGRFAM: Lysyl-tRNA synthetase-related; HAMAP: Lysyl-tRNA synthetase-related; KEGG: mmw:Mmwyl1_0913 lysyl-tRNA synthetase-like protein GenX.
 
  
 0.904
efp
Elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
 
   
 0.877
ADZ90310.1
PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: mmw:Mmwyl1_1069 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase, CheR-type.
    
   0.760
ADZ90378.1
MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
    
   0.760
ADZ91422.1
PFAM: Protein of unknown function DUF462; KEGG: mmw:Mmwyl1_2281 hypothetical protein.
  
   
 0.534
ADZ90643.1
SMART: Elongation factor P, C-terminal; TIGRFAM: Translation elongation factor P-like, YeiP; KEGG: mmw:Mmwyl1_2075 elongation factor P; HAMAP: Translation elongation factor P-like, YeiP; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like.
 
   
 0.494
ADZ92121.1
Fatty oxidation complex, alpha subunit FadB; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
  
 0.494
ADZ90165.1
ABC-type transporter, periplasmic subunit; PFAM: Periplasmic binding protein; KEGG: mmw:Mmwyl1_2064 periplasmic-binding protein.
       0.479
ADZ90164.1
ABC-type transporter, integral membrane subunit; PFAM: ABC transporter permease protein; KEGG: mmw:Mmwyl1_2063 transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.444
ADZ90162.1
Iron-chelate-transporting ATPase; PFAM: ABC transporter-like; KEGG: mmw:Mmwyl1_2061 ABC transporter-like protein; SMART: ATPase, AAA+ type, core.
       0.436
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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