STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ90678.1PFAM: NAD-dependent epimerase/dehydratase; KEGG: has:Halsa_1234 NAD-dependent epimerase/dehydratase. (285 aa)    
Predicted Functional Partners:
ADZ90231.1
Amino acid adenylation domain protein; SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Amino acid adenylation; KEGG: pfs:PFLU3223 putative non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding.
  
 0.939
ADZ90229.1
PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; KEGG: ava:Ava_4108 beta-ketoacyl synthase; SMART: Polyketide synthase, phosphopantetheine-binding.
  
 0.910
ADZ92906.1
PFAM: 4Fe-4S binding domain; KEGG: mmw:Mmwyl1_0549 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein.
   
 0.908
ADZ93187.1
PFAM: Ferredoxin; KEGG: mmw:Mmwyl1_4192 ferredoxin.
  
 
 0.875
ADZ91052.1
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.845
ADZ91054.1
PFAM: Cytochrome c1; KEGG: alv:Alvin_0070 cytochrome c1.
   
 
 0.833
ADZ93234.1
KEGG: mmw:Mmwyl1_4329 hypothetical protein.
   
 
 0.807
ADZ90232.1
Amino acid adenylation domain protein; SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Amino acid adenylation; KEGG: reh:H16_B1687 non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; Taurine catabolism dioxygenase TauD/TfdA.
   
 0.712
ADZ91053.1
Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
 0.659
ADZ89452.1
KEGG: swd:Swoo_0432 cytochrome o ubiquinol oxidase, subunit I; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
    
 
 0.632
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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