Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ADZ91229.1Protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; KEGG: mmw:Mmwyl1_2087 hypothetical protein. (356 aa)    
Predicted Functional Partners:
ADZ91228.1
PFAM: SirA-like; KEGG: mmw:Mmwyl1_2086 SirA family protein; Belongs to the sulfur carrier protein TusA family.
     
 0.810
ADZ91227.1
PFAM: Peptidase M48; KEGG: mmw:Mmwyl1_2085 peptidase M48 Ste24p.
     
 0.647
ADZ90773.1
PFAM: Protein of unknown function DUF2066; KEGG: mmw:Mmwyl1_2807 hypothetical protein.
 
     0.619
hflD
High frequency lysogenization protein hflD; KEGG: mmw:Mmwyl1_3266 hypothetical protein; HAMAP: Uncharacterised protein family UPF0274; PFAM: Uncharacterised protein family UPF0274.
  
     0.413
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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