STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ91242.1UPF0434 protein ycaR; KEGG: mmw:Mmwyl1_2153 hypothetical protein; HAMAP: Uncharacterised protein family UPF0434/Trm112; PFAM: Uncharacterised protein family UPF0434/Trm112; Belongs to the UPF0434 family. (64 aa)    
Predicted Functional Partners:
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
     0.860
ADZ91240.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mmw:Mmwyl1_2151 biopolymer transport protein ExbD/TolR.
       0.825
ADZ91243.1
PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: mmw:Mmwyl1_2154 protein tyrosine phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight.
       0.825
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.825
ADZ91238.1
KEGG: mmw:Mmwyl1_2149 ComEC/Rec2-like protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
       0.800
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.773
ADZ91239.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mmw:Mmwyl1_2150 MotA/TolQ/ExbB proton channel.
       0.711
ADZ91237.1
PFAM: Protein of unknown function DUF2062; KEGG: mmw:Mmwyl1_2148 hypothetical protein.
       0.600
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
  
    0.509
nnrD
YjeF-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.
       0.418
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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