STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ91299.1PFAM: Protein of unknown function DUF1315; KEGG: mmw:Mmwyl1_2165 hypothetical protein. (101 aa)    
Predicted Functional Partners:
ADZ91537.1
TIGRFAM: Methionine sulphoxide reductase B; KEGG: hch:HCH_02302 peptide methionine sulfoxide reductase domain-containing protein; PFAM: Methionine sulphoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.880
ADZ91300.1
KEGG: mmw:Mmwyl1_2166 hypothetical protein.
  
    0.840
ADZ91298.1
PFAM: Peptidase S54, rhomboid domain; KEGG: mmw:Mmwyl1_2164 rhomboid family protein.
 
     0.822
ADZ91301.1
TIGRFAM: Peptidase M1, alanyl aminopeptidase; KEGG: mmw:Mmwyl1_2167 aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal.
       0.809
ADZ90776.1
Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
    0.806
nfuA
Fe/S biogenesis protein nfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.760
ADZ91508.1
tRNA-hydroxylase; PFAM: tRNA--hydroxylase; KEGG: mmw:Mmwyl1_2099 tRNA--hydroxylase.
  
     0.716
ADZ89481.1
KEGG: mmw:Mmwyl1_0321 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02443; PFAM: Conserved hypothetical protein CHP02443.
  
     0.715
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
     0.693
ADZ89518.1
KEGG: spl:Spea_1784 succinate dehydrogenase cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit.
  
    0.688
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.