STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ91663.1KEGG: pmy:Pmen_3476 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal. (256 aa)    
Predicted Functional Partners:
ADZ89400.1
TIGRFAM: Conserved hypothetical protein CHP00370; PFAM: Allophanate hydrolase subunit 1; KEGG: mmw:Mmwyl1_0360 allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1.
  
    0.560
ADZ89401.1
Urea amidolyase related protein; TIGRFAM: Allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; KEGG: mmw:Mmwyl1_0359 UreA amidolyase-like protein; SMART: Allophanate hydrolase subunit 2.
  
    0.560
purU-2
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
       0.499
ADZ90913.1
Transcriptional regulator, IclR family; KEGG: cgt:cgR_2325 hypothetical protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal.
  
     0.445
folD-2
Bifunctional protein folD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
     
 0.435
ADZ91660.1
KEGG: pfs:PFLU2319 sarcosine oxidase subunit beta; PFAM: FAD dependent oxidoreductase.
  
    0.427
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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