STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ93139.1PFAM: Major facilitator superfamily MFS-1; KEGG: pae:PA1262 major facilitator superfamily (MFS) transporter. (473 aa)    
Predicted Functional Partners:
ADZ89473.1
PFAM: Secretion protein HlyD; KEGG: mmw:Mmwyl1_0097 secretion protein HlyD family protein.
 
 0.802
ADZ93140.1
KEGG: sde:Sde_1505 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain.
  
    0.698
ADZ93298.1
PFAM: Secretion protein HlyD; KEGG: hch:HCH_05480 membrane-fusion protein.
  
 
 0.587
ADZ90231.1
Amino acid adenylation domain protein; SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Amino acid adenylation; KEGG: pfs:PFLU3223 putative non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding.
  
  
 0.531
ADZ93141.1
YbhB YbcL family protein; KEGG: cps:CPS_4884 hypothetical protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP.
       0.524
ADZ90229.1
PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; KEGG: ava:Ava_4108 beta-ketoacyl synthase; SMART: Polyketide synthase, phosphopantetheine-binding.
  
  
 0.520
Your Current Organism:
Marinomonas mediterranea
NCBI taxonomy Id: 717774
Other names: M. mediterranea MMB-1, Marinomonas mediterranea MMB-1, Marinomonas mediterranea str. MMB-1, Marinomonas mediterranea strain MMB-1
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