STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL1_09470Outer membrane cobalamin receptor protein. (139 aa)    
Predicted Functional Partners:
AL1_06170
Hypothetical protein.
 
    0.791
AL1_06180
Hypothetical protein.
 
    0.784
AL1_09480
Hypothetical protein.
       0.783
AL1_27480
PKD domain.
 
    0.743
AL1_06210
Hypothetical protein.
  
     0.717
AL1_19790
Hypothetical protein.
 
    0.677
AL1_18970
Hypothetical protein.
  
     0.676
AL1_17240
Aminopeptidase C; Belongs to the peptidase C1 family.
  
     0.569
AL1_21750
PAP2 superfamily.
 
     0.533
AL1_09130
Outer membrane receptor proteins, mostly Fe transport.
  
     0.407
Your Current Organism:
Alistipes shahii
NCBI taxonomy Id: 717959
Other names: A. shahii WAL 8301, Alistipes shahii WAL 8301, Alistipes shahii str. WAL 8301, Alistipes shahii strain WAL 8301, Alistipes sp. WAL 8301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.