STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL1_27480PKD domain. (598 aa)    
Predicted Functional Partners:
AL1_27490
Hypothetical protein.
 
  
 0.877
AL1_27500
Outer membrane cobalamin receptor protein.
 
    0.813
AL1_06170
Hypothetical protein.
  
 0.785
AL1_19800
Hypothetical protein.
 
  
 0.752
AL1_19780
Hypothetical protein.
 
    0.751
AL1_19770
Hypothetical protein.
 
  
 0.750
AL1_06160
Outer membrane cobalamin receptor protein.
 
    0.745
AL1_09470
Outer membrane cobalamin receptor protein.
 
    0.743
AL1_15810
Hypothetical protein.
  
     0.700
AL1_29400
Glycosyl hydrolases family 18./Domain of unknown function (DUF1735).
  
     0.652
Your Current Organism:
Alistipes shahii
NCBI taxonomy Id: 717959
Other names: A. shahii WAL 8301, Alistipes shahii WAL 8301, Alistipes shahii str. WAL 8301, Alistipes shahii strain WAL 8301, Alistipes sp. WAL 8301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.