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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL1_27770Predicted Zn-dependent peptidases. (404 aa)    
Predicted Functional Partners:
nuoD
NADH dehydrogenase subunit C /NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
   
 
 0.969
AL1_27790
Predicted O-methyltransferase.
  
   0.812
AL1_27780
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
  
    0.785
AL1_27800
Predicted pyrophosphatase.
       0.784
AL1_13410
Predicted Zn-dependent peptidases.
  
     0.682
AL1_26220
Nitroreductase.
  
 
 0.627
AL1_25980
Ni,Fe-hydrogenase III large subunit.
   
 
 0.623
AL1_06530
4Fe-4S binding domain.
  
 
 0.620
AL1_06920
4Fe-4S binding domain.
  
 
 0.618
AL1_25970
Ni,Fe-hydrogenase III small subunit.
  
 
 0.618
Your Current Organism:
Alistipes shahii
NCBI taxonomy Id: 717959
Other names: A. shahii WAL 8301, Alistipes shahii WAL 8301, Alistipes shahii str. WAL 8301, Alistipes shahii strain WAL 8301, Alistipes sp. WAL 8301
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