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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC1_32040Stage II sporulation protein E (SpoIIE). (391 aa)    
Predicted Functional Partners:
CC1_32050
Iron only hydrogenase large subunit, C-terminal domain.
 
     0.880
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 
 0.807
CC1_32020
NADH dehydrogenase subunit E.
 
    0.797
CC1_10700
PAS domain S-box.
 
     0.794
CC1_29710
Tyrosine lyase ThiH.
   
    0.739
CC1_27710
Diguanylate cyclase (GGDEF) domain.
  
  
 0.698
CC1_03270
Hpt domain.
  
  
 0.674
CC1_10570
Iron only hydrogenase large subunit, C-terminal domain.
 
     0.673
CC1_10620
Ferredoxin.
 
     0.595
CC1_03260
Diguanylate cyclase (GGDEF) domain.
  
  
 0.571
Your Current Organism:
Coprococcus catus
NCBI taxonomy Id: 717962
Other names: C. catus GD/7, Coprococcus catus GD/7, Coprococcus catus str. GD/7, Coprococcus catus strain GD/7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.