Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC1_32090Hypothetical protein. (62 aa)    
Predicted Functional Partners:
CC1_32100
Phage DNA replication protein (predicted replicative helicase loader).
 
     0.944
CC1_06170
N-terminal phage replisome organiser (Phage_rep_org_N).
 
     0.791
CC1_06180
Phage DNA replication protein (predicted replicative helicase loader).
 
     0.781
CC1_32140
Hypothetical protein.
  
     0.768
CC1_32150
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.757
CC1_08630
Phage DNA replication protein (predicted replicative helicase loader).
 
     0.670
CC1_26310
Relaxase/Mobilisation nuclease domain.
 
     0.583
CC1_26320
Bacterial mobilisation protein (MobC).
 
     0.570
CC1_08290
Hypothetical protein.
 
     0.522
CC1_25940
Hypothetical protein.
 
     0.516
Your Current Organism:
Coprococcus catus
NCBI taxonomy Id: 717962
Other names: C. catus GD/7, Coprococcus catus GD/7, Coprococcus catus str. GD/7, Coprococcus catus strain GD/7
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