sbcD protein (Faecalibacterium prausnitzii L26)

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sbcD

Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (379 aa)

Predicted Functional Partners:

polA

0.999

FP2_22550

0.984

FP2_29440

0.930

recA

0.901

FP2_03070

0.829

FP2_13010

0.800

FP2_05450

0.797

FP2_02130

0.681

FP2_03310

0.674

FP2_04790

0.674

Your Current Organism:

Faecalibacterium prausnitzii L26

NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FP2_02130	polA	FP2_02130	FP2_26340	Hypothetical protein; ATP-dependent DNA helicase.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.461
FP2_02130	recA	FP2_02130	FP2_15060	Hypothetical protein; ATP-dependent DNA helicase.	RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.477
FP2_02130	sbcD	FP2_02130	FP2_01950	Hypothetical protein; ATP-dependent DNA helicase.	Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.	0.681
FP2_03070	FP2_22550	FP2_03070	FP2_22550	Rad3-related DNA helicases.	ATP-dependent DNA helicase, RecQ family.	0.611
FP2_03070	polA	FP2_03070	FP2_26340	Rad3-related DNA helicases.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.894
FP2_03070	recA	FP2_03070	FP2_15060	Rad3-related DNA helicases.	RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.526
FP2_03070	sbcD	FP2_03070	FP2_01950	Rad3-related DNA helicases.	Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.	0.829
FP2_03310	polA	FP2_03310	FP2_26340	Hypothetical protein.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.609
FP2_03310	recA	FP2_03310	FP2_15060	Hypothetical protein.	RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.419
FP2_03310	sbcD	FP2_03310	FP2_01950	Hypothetical protein.	Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.	0.674
FP2_04790	polA	FP2_04790	FP2_26340	Hypothetical protein.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.609
FP2_04790	recA	FP2_04790	FP2_15060	Hypothetical protein.	RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.419
FP2_04790	sbcD	FP2_04790	FP2_01950	Hypothetical protein.	Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.	0.674
FP2_05450	polA	FP2_05450	FP2_26340	Predicted exonuclease of the beta-lactamase fold involved in RNA processing.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.759
FP2_05450	sbcD	FP2_05450	FP2_01950	Predicted exonuclease of the beta-lactamase fold involved in RNA processing.	Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.	0.797
FP2_13010	FP2_22550	FP2_13010	FP2_22550	Rad3-related DNA helicases.	ATP-dependent DNA helicase, RecQ family.	0.611
FP2_13010	polA	FP2_13010	FP2_26340	Rad3-related DNA helicases.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.894
FP2_13010	recA	FP2_13010	FP2_15060	Rad3-related DNA helicases.	RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.526
FP2_13010	sbcD	FP2_13010	FP2_01950	Rad3-related DNA helicases.	Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.	0.800
FP2_22550	FP2_03070	FP2_22550	FP2_03070	ATP-dependent DNA helicase, RecQ family.	Rad3-related DNA helicases.	0.611

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