Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP2_03550Hypothetical protein. (96 aa)    
Predicted Functional Partners:
FP2_03620
Sigma-70, region 4.
  
     0.748
FP2_04360
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.719
FP2_03480
Hypothetical protein.
 
     0.713
FP2_04460
Relaxase/Mobilisation nuclease domain.
 
     0.704
FP2_17470
Hypothetical protein.
 
     0.686
FP2_03330
Hypothetical protein.
  
     0.666
FP2_03300
ParB-like partition proteins; Belongs to the ParB family.
  
     0.665
FP2_03490
Hypothetical protein.
 
     0.655
FP2_04520
Hypothetical protein.
 
     0.633
FP2_10840
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.619
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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