Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP2_04450Hypothetical protein. (119 aa)    
Predicted Functional Partners:
FP2_19120
Helix-turn-helix.
 
    0.770
FP2_11790
HipA-like C-terminal domain.
   
 
 0.766
FP2_14310
Hypothetical protein.
  
     0.728
FP2_04780
Antirestriction protein (ArdA).
  
     0.678
FP2_03320
Antirestriction protein (ArdA).
  
     0.668
FP2_24100
DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
     0.639
FP2_14180
Helix-turn-helix.
 
    0.624
FP2_03000
Hypothetical protein.
  
     0.536
FP2_04440
Transcriptional regulator, AraC family.
  
    0.514
FP2_04470
Hypothetical protein.
 
     0.510
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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