Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP2_05590DAK2 domain fusion protein YloV. (564 aa)    
Predicted Functional Partners:
FP2_23470
EDD domain protein, DegV family.
 
 0.994
FP2_05600
Uncharacterized protein conserved in bacteria.
 
  
 0.983
FP2_05140
EDD domain protein, DegV family.
 
 
 0.943
FP2_23000
EDD domain protein, DegV family.
 
 0.900
FP2_17980
EDD domain protein, DegV family.
 
 0.890
polC
DNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
     0.586
FP2_02270
Conserved hypothetical protein TIGR00488.
 
   
 0.546
FP2_07700
Uncharacterized protein conserved in bacteria.
  
  
 0.511
FP2_07810
DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.455
FP2_11220
Hypothetical protein.
   
    0.452
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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