Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP2_11800FOG: CheY-like receiver. (210 aa)    
Predicted Functional Partners:
FP2_11810
Predicted periplasmic ligand-binding sensor domain.
     0.986
FP2_12540
Signal transduction histidine kinase.
 
 0.921
FP2_01280
Diguanylate cyclase (GGDEF) domain.
 
 
 0.842
FP2_30670
Diguanylate cyclase (GGDEF) domain.
 
 
 0.837
FP2_15030
Signal transduction histidine kinase.
 
 0.763
FP2_20720
Signal transduction histidine kinase.
 
 0.717
FP2_31400
Signal transduction histidine kinase.
 
 0.695
FP2_30660
FOG: HPt domain.
 
  
 0.683
FP2_30740
Hpt domain.
 
  
 0.591
FP2_11790
HipA-like C-terminal domain.
       0.570
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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