Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FP2_15150Diguanylate cyclase (GGDEF) domain. (905 aa)    
Predicted Functional Partners:
FP2_15140
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-).
     0.940
FP2_01280
Diguanylate cyclase (GGDEF) domain.
 
 
0.701
FP2_30670
Diguanylate cyclase (GGDEF) domain.
 
 
0.697
FP2_30660
FOG: HPt domain.
 
  
 0.615
FP2_09580
HD-GYP domain.
 
  
 0.589
FP2_15700
Signal transduction histidine kinase.
  
  
 0.551
FP2_11810
Predicted periplasmic ligand-binding sensor domain.
  
  
 0.550
FP2_11800
FOG: CheY-like receiver.
  
  
 0.491
FP2_30740
Hpt domain.
 
  
 0.457
FP2_21660
Hypothetical protein.
  
     0.433
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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