STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP2_17440DNA-directed RNA polymerase specialized sigma subunit. (137 aa)    
Predicted Functional Partners:
FP2_08370
Predicted transcriptional regulators.
  
     0.703
FP2_14150
Hypothetical protein.
  
     0.657
FP2_14170
Relaxase/Mobilisation nuclease domain.
  
     0.649
FP2_00200
Relaxase/Mobilisation nuclease domain.
  
     0.640
FP2_00150
Hypothetical protein.
  
     0.630
FP2_23820
Hypothetical protein.
  
 
 0.527
FP2_14060
Hypothetical protein.
  
     0.486
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.473
FP2_14120
Hypothetical protein.
  
     0.470
FP2_14090
Hypothetical protein.
  
     0.463
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.