STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP2_19210Sugar transferases involved in lipopolysaccharide synthesis. (207 aa)    
Predicted Functional Partners:
FP2_31690
Glycosyltransferase.
  
 0.867
FP2_31720
ATPases involved in chromosome partitioning.
 
  
 0.860
FP2_19230
Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.847
FP2_19220
Hypothetical protein.
  
  
 0.785
FP2_23140
Predicted glycosyltransferases.
  
  
 0.688
FP2_26530
Predicted glycosyltransferases.
  
  
 0.688
FP2_31590
Predicted nucleoside-diphosphate sugar epimerases.
  
  
 0.573
FP2_27040
Hypothetical protein.
 
  
 0.558
FP2_31750
Capsular polysaccharide biosynthesis protein.
 
  
 0.520
aspS
Aspartyl/asparaginyl-tRNA synthetases; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.
       0.513
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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