Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP2_22230Plasmid mobilization system relaxase. (526 aa)    
Predicted Functional Partners:
FP2_22170
DNA ligase N terminus./Helix-turn-helix.
  
    0.767
FP2_22260
Hypothetical protein.
 
     0.766
FP2_22190
DeoR-like helix-turn-helix domain.
  
     0.765
FP2_22150
Hypothetical protein.
  
     0.734
FP2_22270
Site-specific recombinases, DNA invertase Pin homologs.
  
     0.712
FP2_17740
Hypothetical protein.
  
     0.617
FP2_22180
Hypothetical protein.
  
     0.597
FP2_19710
Predicted transcriptional regulators.
  
    0.543
FP2_27640
Predicted transcriptional regulators.
  
    0.533
FP2_18250
Predicted transcriptional regulators.
  
    0.477
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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