STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP2_24700TRAP transporter, DctM subunit. (446 aa)    
Predicted Functional Partners:
FP2_24690
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.945
FP2_24160
TRAP transporter, DctM subunit.
  
  
 
0.915
FP2_24680
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.912
FP2_24670
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family.
 
  
 0.874
FP2_24150
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.872
FP2_17580
Uncharacterized protein conserved in bacteria.
  
   
 0.485
FP2_24140
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.477
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.