Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP2_26520SpoIID/LytB domain. (359 aa)    
Predicted Functional Partners:
FP2_02500
SpoIID/LytB domain.
  
     0.770
FP2_11350
Stage II sporulation protein E (SpoIIE).
 
   
 0.661
FP2_12190
Germination protease.
  
     0.626
FP2_06430
Putative stage IV sporulation protein YqfD.
  
  
 0.569
FP2_08190
Stage IV sporulation protein B.
  
   
 0.560
FP2_01970
Stage II sporulation protein R (spore_II_R).
  
   
 0.557
FP2_08180
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
   
 0.548
FP2_12240
Stage V sporulation protein AC.
  
   
 0.545
FP2_10910
Uncharacterized protein conserved in bacteria C-term(DUF2220).
  
     0.544
FP2_26530
Predicted glycosyltransferases.
  
    0.542
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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