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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP2_28910Nickel ABC transporter, periplasmic nickel-binding protein. (541 aa)    
Predicted Functional Partners:
FP2_28920
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.990
FP2_28930
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.990
FP2_28940
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
 
 
 0.980
FP2_28950
ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 
 0.977
FP2_11600
ABC-type dipeptide transport system, periplasmic component.
  
  
 
0.922
FP2_14240
ABC-type dipeptide transport system, periplasmic component.
  
  
 
0.920
FP2_28960
Predicted deacylase.
 
     0.825
FP2_11560
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.820
FP2_19990
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
  
    0.814
FP2_14210
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.786
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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