Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FP2_29020CotH protein. (601 aa)    
Predicted Functional Partners:
FP2_29030
VTC domain.
 
     0.947
FP2_29040
Hypothetical protein.
 
     0.915
FP2_29050
Hypothetical protein.
 
     0.898
FP2_28980
Hypothetical protein.
 
     0.800
FP2_28990
Uncharacterized protein conserved in bacteria.
 
     0.800
FP2_28970
Hypothetical protein.
 
    0.789
FP2_13230
Hypothetical protein.
  
     0.709
FP2_22080
Protein of unknown function (DUF1266).
 
     0.695
FP2_29000
Glycosyltransferase.
 
    0.686
FP2_27380
Transcriptional regulatory protein, C terminal./Bacterial transcriptional activator domain.
  
     0.541
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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