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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FP2_30670Diguanylate cyclase (GGDEF) domain. (631 aa)    
Predicted Functional Partners:
FP2_30660
FOG: HPt domain.
 
  
 0.968
FP2_30740
Hpt domain.
 
  
 0.900
FP2_11810
Predicted periplasmic ligand-binding sensor domain.
 
 
 0.850
FP2_11800
FOG: CheY-like receiver.
 
 
 0.847
FP2_15700
Signal transduction histidine kinase.
 
 0.812
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 
 0.810
FP2_27990
Diguanylate cyclase (GGDEF) domain.
 
 
 0.809
FP2_01280
Diguanylate cyclase (GGDEF) domain.
 
  
0.796
FP2_27090
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
  
 0.795
FP2_25400
Two-component system, cell cycle sensor histidine kinase and response regulator CckA; His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain.
 
 
 0.780
Your Current Organism:
Faecalibacterium prausnitzii L26
NCBI taxonomy Id: 718252
Other names: F. prausnitzii L2-6, Faecalibacterium prausnitzii L2-6, Faecalibacterium prausnitzii str. L2-6, Faecalibacterium prausnitzii strain L2-6, butyrate-producing bacterium L2-6
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