STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALB04500.1Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)    
Predicted Functional Partners:
ALB04349.1
Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.927
ALB02981.1
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
    
 0.915
pgl
Hypothetical protein; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
   
 0.912
ALB02468.1
PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.593
ALB02499.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.523
xylB
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.410
ALB03933.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.409
Your Current Organism:
Kocuria palustris
NCBI taxonomy Id: 71999
Other names: CCUG 52395, CIP 105971, DSM 11925, IFO 16318, JCM 11652, K. palustris, NBRC 16318, accession Y16263, strain TAGA27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.