STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM13E3 ubiquitin-protein ligase TRIM13. (408 aa)    
Predicted Functional Partners:
SPRYD7
Chronic lymphocytic leukemia deletion region 6 protein-like protein.
   
 
 0.749
ZCCHC3
Zinc finger CCHC domain-containing protein 3.
   
 0.653
ALPK1
Alpha-protein kinase 1.
      
 0.639
LRSAM1
E3 ubiquitin-protein ligase LRSAM1.
    
 
 0.619
SGCZ
Zeta-sarcoglycan.
      
 0.615
RNF166
RING finger protein 166.
      
 0.605
XPNPEP3
Putative Xaa-Pro aminopeptidase 3.
      
 0.605
NFX1
Transcriptional repressor NF-X1.
    
 
 0.587
TRIM44
Tripartite motif-containing protein 44.
    
 
 0.556
TRIM37
E3 ubiquitin-protein ligase TRIM37.
    
 
 0.525
Your Current Organism:
Bos mutus
NCBI taxonomy Id: 72004
Other names: B. mutus, Bos grunniens mutus, Poephagus mutus, wild yak
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.