STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEV66981.1PFAM: S23 ribosomal protein; TIGRFAM: TIGR02436 family protein. (128 aa)    
Predicted Functional Partners:
AEV68041.1
PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E.
  
 
 0.590
AEV69492.1
PFAM: Mu transposase, C-terminal; manually curated.
  
     0.589
AEV69108.1
PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2; manually curated.
 
  
 0.574
AEV69493.1
Integrase family protein; PFAM: Integrase core domain.
  
     0.560
AEV69491.1
Hypothetical protein.
  
     0.558
AEV69494.1
PFAM: TnsA endonuclease N terminal; TnsA endonuclease C terminal.
  
     0.550
AEV68043.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.549
AEV67018.1
Integrase family protein; PFAM: Integrase core domain.
  
     0.532
AEV66954.1
PFAM: Mu transposase, C-terminal; Integrase core domain.
  
     0.517
AEV67019.1
Hypothetical protein; Manually curated.
  
     0.514
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.