Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV67004.1PFAM: Helix-turn-helix. (129 aa)    
Predicted Functional Partners:
AEV67005.1
Putative Zn peptidase; PFAM: Domain of unknown function (DUF955).
 
  
 0.957
AEV67007.1
Hypothetical protein.
 
     0.862
AEV67006.1
Hypothetical protein.
       0.799
AEV66949.1
Hypothetical protein.
  
     0.773
AEV66945.1
Hypothetical protein.
  
     0.765
AEV66998.1
Hypothetical protein.
  
     0.756
AEV66924.1
Hypothetical protein; Manually curated.
  
    0.727
AEV66986.1
DNA primase; PFAM: CHC2 zinc finger.
  
    0.674
AEV66926.1
PFAM: Helix-turn-helix.
  
     0.637
AEV66919.1
PFAM: S23 ribosomal protein.
  
    0.547
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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