Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV67132.1Lipid A core-O-antigen ligase-like enyme; PFAM: O-Antigen ligase. (536 aa)    
Predicted Functional Partners:
AEV67130.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.938
AEV67131.1
Hypothetical protein.
       0.817
AEV67141.1
PFAM: Glycosyl transferases group 1; Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB.
 
  
 0.815
AEV67133.1
Hypothetical protein; Manually curated.
 
     0.750
AEV68857.1
PFAM: Copper amine oxidase N-terminal domain.
  
     0.689
AEV67721.1
Beta-propeller domain-containing protein, methanol dehydrogenase; PFAM: S-layer homology domain.
  
     0.684
AEV66776.1
Putative S-layer protein; PFAM: S-layer homology domain.
 
     0.658
AEV67138.1
Hypothetical protein.
 
     0.658
AEV67046.1
Putative S-layer protein; PFAM: S-layer homology domain.
  
     0.656
AEV69807.1
Putative S-layer protein; PFAM: Cohesin domain; S-layer homology domain; manually curated.
  
     0.655
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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