Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV67533.1Transposase; PFAM: Sugar-specific transcriptional regulator TrmB; Integrase core domain; manually curated. (488 aa)    
Predicted Functional Partners:
AEV67532.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
 
   0.947
AEV67090.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
 
   0.807
AEV68276.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
 
   0.807
AEV68901.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
 
   0.807
AEV70243.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
  
   0.800
AEV69953.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
  
   0.799
AEV68403.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
 
   0.798
AEV68945.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
 
   0.798
AEV68232.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
  
   0.793
AEV69499.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
  
   0.793
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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