Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEV67626.1PFAM: Clostripain family. (792 aa)    
Predicted Functional Partners:
AEV69135.1
PFAM: Protein kinase domain; PASTA domain.
   
 
 0.895
AEV68762.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated protein; manually curated.
  
   0.746
AEV67209.1
Hypothetical protein.
  
    0.741
AEV69368.1
PFAM: CotH protein.
  
     0.734
AEV68765.1
PFAM: RAMP superfamily.
  
     0.726
AEV69370.1
PFAM: CotH protein.
  
    0.718
AEV68858.1
PFAM: Mycoplasma protein of unknown function, DUF285; Dockerin type I repeat.
  
     0.701
AEV67440.1
Hypothetical protein.
  
     0.695
AEV69714.1
Hypothetical protein.
  
     0.686
AEV68764.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
  
     0.679
Your Current Organism:
Hungateiclostridium clariflavum
NCBI taxonomy Id: 720554
Other names: Clostridium clariflavum DSM 19732, Clostridium clariflavum EBR45, H. clariflavum DSM 19732, Hungateiclostridium clariflavum DSM 19732
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